Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/92b9736cd78009eab1ad2c099d3c0809edbdf958content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 92b9736cd78009eab1ad2c099d3c0809edbdf958
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 92b9736cd78009eab1ad2c099d3c0809edbdf958
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2245_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCCGGTTTCACAGACT-2245_B02, TCATGAGGTAGCTGGT-2245_B02, CATAAGCTCCGTTAAA-2245_B02, ATTTAGCCAGGCGATA-2245_B02, GTTCACCTCATGCAAC-2245_B02 (top 5 of 8957 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
489,482,725
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 489482725
chr1 43165168
chr2 37892473
chr3 31621549
chr4 25354741
chr5 26768620
chr6 27202881
chr7 25932410
chr8 22236901
chr9 20390385
chr10 22687557
chr11 26045378
chr12 23767314
chr13 13312324
chr14 16329762
chr15 15023871
chr16 18109361
chr17 21296306
chr18 11237918
chr19 18937400
chr20 12904035
chr21 5893407
chr22 10277760
chrX 12947351
chrY 34486
GL000009.2 2575
GL000194.1 19635
GL000195.1 16670
GL000205.2 28656
GL000213.1 315
GL000218.1 4808
GL000219.1 24209
KI270711.1 768
KI270713.1 7027
KI270721.1 564
KI270726.1 32
KI270727.1 1190
KI270728.1 5194
KI270731.1 713
KI270734.1 1011

Fragment lengths

fragments min max mean median
fragments 489482725 1 5039 182.67 156
global fragment-length histogram

Files

Filename Size md5
92b9736cd78009eab1ad2c099d3c0809edbdf958.gz 4.51 GB 115d16a5811b8507c6bdf1abd6674756
92b9736cd78009eab1ad2c099d3c0809edbdf958.gz.tbi 1.61 MB 3f52f30d087ec0221510ad67afa0f72c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a6be25a100e29f2f67787b8d0874558a
statistics/