Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/932feda2d5a50b3615ef62c6a424658f12b95238content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 932feda2d5a50b3615ef62c6a424658f12b95238
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 932feda2d5a50b3615ef62c6a424658f12b95238
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2377_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAAGCTATCATGCTCC-2377_A07, CTGACCAAGCATCCAG-2377_A07, TCATGAGGTTACTTGC-2377_A07, GGTACTTAGGTGAAAT-2377_A07, GTGATCAGTCCTTCAG-2377_A07 (top 5 of 4189 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
210,195,750
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 210195750
chr1 18659746
chr2 16528316
chr3 13750411
chr4 11103816
chr5 11777037
chr6 11701765
chr7 11358813
chr8 9491211
chr9 8645790
chr10 9768010
chr11 11046477
chr12 10410998
chr13 5716511
chr14 7084666
chr15 6550419
chr16 7792911
chr17 9026731
chr18 4912528
chr19 7814919
chr20 5567165
chr21 2461696
chr22 4323317
chrX 4362971
chrY 298954
GL000009.2 721
GL000194.1 4211
GL000195.1 5724
GL000205.2 13549
GL000213.1 65
GL000218.1 1732
GL000219.1 8920
KI270711.1 571
KI270713.1 3400
KI270721.1 206
KI270726.1 34
KI270727.1 145
KI270728.1 684
KI270731.1 151
KI270734.1 459

Fragment lengths

fragments min max mean median
fragments 210195750 1 5038 188.49 160
global fragment-length histogram

Files

Filename Size md5
932feda2d5a50b3615ef62c6a424658f12b95238.gz 1.99 GB a6e6f8d168c3c5aa647b3f4ed29c01cf
932feda2d5a50b3615ef62c6a424658f12b95238.gz.tbi 1.05 MB e85ba0c9e09fd1245f70cfaedd20ccce
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a40f04b6d3c1db0b49c619ce38507ad2
statistics/