Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/93c6ec45bd2a1ca18516918a7f1a448e84006372content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 93c6ec45bd2a1ca18516918a7f1a448e84006372
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 93c6ec45bd2a1ca18516918a7f1a448e84006372
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2305_C01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGCTAACATTGTTGG-2305_C01, AGTGTGGCAATAACCT-2305_C01, TACGCACCAGCGCTTG-2305_C01, CGGAGCAAGCTGCACA-2305_C01, CCGGTTAAGGCACAGG-2305_C01 (top 5 of 7642 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
320,465,530
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 320465530
chr1 28485473
chr2 24976646
chr3 20783959
chr4 16476114
chr5 17753971
chr6 17676743
chr7 17075958
chr8 14567709
chr9 13126472
chr10 14923156
chr11 17027277
chr12 15698094
chr13 8655103
chr14 10785035
chr15 9847376
chr16 11766155
chr17 13922805
chr18 7287028
chr19 12447928
chr20 8448426
chr21 3711461
chr22 6562030
chrX 8361122
chrY 16210
GL000009.2 621
GL000194.1 7170
GL000195.1 8803
GL000205.2 18177
GL000213.1 69
GL000218.1 4934
GL000219.1 31725
KI270711.1 613
KI270713.1 3218
KI270721.1 143
KI270726.1 10
KI270727.1 559
KI270728.1 6397
KI270731.1 240
KI270734.1 600

Fragment lengths

fragments min max mean median
fragments 320465530 1 5040 178.84 159
global fragment-length histogram

Files

Filename Size md5
93c6ec45bd2a1ca18516918a7f1a448e84006372.gz 3.0 GB 27d8d46a366ff536da2fbd6d118ff51e
93c6ec45bd2a1ca18516918a7f1a448e84006372.gz.tbi 1.32 MB 9009544a1392bcfe969beef32c3783b3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 49859016ef58a5a3df9fd19ffecfcf21
statistics/