Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/9435783e830866eb0c46d1736de4b6cdf0ba21a3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 9435783e830866eb0c46d1736de4b6cdf0ba21a3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 9435783e830866eb0c46d1736de4b6cdf0ba21a3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 822_B01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GATTAAGCATCCTAGA-822_B01, TGGCTAAGTTACTTCA-822_B01, CTAGTGAGTTGTCATC-822_B01, GCCTATTGTTCGGTAA-822_B01, CTACGAAGTGTTGCTT-822_B01 (top 5 of 4553 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
146,894,730
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 146894730
chr1 13343919
chr2 11502569
chr3 9418092
chr4 7291544
chr5 7944672
chr6 7989178
chr7 7699798
chr8 6519228
chr9 6331471
chr10 6921824
chr11 7947489
chr12 7125719
chr13 3829898
chr14 4923122
chr15 4585289
chr16 5499464
chr17 6741428
chr18 3304284
chr19 5896383
chr20 3962924
chr21 1705907
chr22 3143545
chrX 3034138
chrY 206521
GL000009.2 653
GL000194.1 2894
GL000195.1 3589
GL000205.2 7031
GL000213.1 34
GL000218.1 1936
GL000219.1 6061
KI270711.1 353
KI270713.1 1419
KI270721.1 71
KI270726.1 12
KI270727.1 141
KI270728.1 1636
KI270731.1 163
KI270734.1 331

Fragment lengths

fragments min max mean median
fragments 146894730 1 5038 166.73 159
global fragment-length histogram

Files

Filename Size md5
9435783e830866eb0c46d1736de4b6cdf0ba21a3.gz 1.39 GB 40cffd48fc413dadd10db373f77d66f4
9435783e830866eb0c46d1736de4b6cdf0ba21a3.gz.tbi 899.97 KB 285e0c250d3b1aca79601a98554b88d1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0dfb716898da1ecf90877d41314f68fd
statistics/