Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/951ba259cc775f3550b4556169d06c6b8eb91afecontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 951ba259cc775f3550b4556169d06c6b8eb91afe
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 951ba259cc775f3550b4556169d06c6b8eb91afe
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2278_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AACCTTGCACGAATTT-2278_C05, GCCTGACAGGGATGAC-2278_C05, CCTGGATCACGGTTTA-2278_C05, CTAGTAGGTTTCCTCC-2278_C05, ATTACTGAGTACCGCA-2278_C05 (top 5 of 4992 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
267,821,148
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 267821148
chr1 23878282
chr2 20654174
chr3 17136772
chr4 13586897
chr5 14607732
chr6 14677969
chr7 14093624
chr8 12099864
chr9 11313205
chr10 12498162
chr11 14205613
chr12 12901544
chr13 7260303
chr14 8914398
chr15 8285698
chr16 9909645
chr17 11964576
chr18 6066627
chr19 10478703
chr20 7168131
chr21 3189642
chr22 5637070
chrX 7214150
chrY 19957
GL000009.2 1448
GL000194.1 9388
GL000195.1 9124
GL000205.2 15413
GL000213.1 189
GL000218.1 2370
GL000219.1 11553
KI270711.1 502
KI270713.1 3796
KI270721.1 304
KI270726.1 15
KI270727.1 712
KI270728.1 2615
KI270731.1 420
KI270734.1 561

Fragment lengths

fragments min max mean median
fragments 267821148 1 5041 177.52 150
global fragment-length histogram

Files

Filename Size md5
951ba259cc775f3550b4556169d06c6b8eb91afe.gz 2.52 GB d273a0580dbec1782e09598447317a1c
951ba259cc775f3550b4556169d06c6b8eb91afe.gz.tbi 1.21 MB 095337887adaf84897390f3df0d1d24c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB aed852431fbd5718349e7e04cfd35e01
statistics/