Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/98123d9e5e7a10180d2694f55c4f538179489b6econtent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 98123d9e5e7a10180d2694f55c4f538179489b6e
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 98123d9e5e7a10180d2694f55c4f538179489b6e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2540_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TATTAGGTCCCTCAGT-2540_A02, TGTAACTCAAGGTCCT-2540_A02, GTAGGCGAGCGCAATT-2540_A02, TGCTAGCCAGTTAAAG-2540_A02, TCATGAGGTCAAGTGC-2540_A02 (top 5 of 3495 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
173,914,669
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 173914669
chr1 15373639
chr2 13494703
chr3 11372996
chr4 9159110
chr5 9620942
chr6 9528118
chr7 9242337
chr8 7951338
chr9 7237111
chr10 8087301
chr11 9065504
chr12 8428365
chr13 4779268
chr14 5832555
chr15 5384878
chr16 6395430
chr17 7430968
chr18 4053641
chr19 6351725
chr20 4568220
chr21 2100442
chr22 3616223
chrX 4784854
chrY 14736
GL000009.2 1495
GL000194.1 3663
GL000195.1 3901
GL000205.2 11118
GL000213.1 157
GL000218.1 2626
GL000219.1 10461
KI270711.1 436
KI270713.1 2555
KI270721.1 201
KI270726.1 12
KI270727.1 591
KI270728.1 2389
KI270731.1 186
KI270734.1 474

Fragment lengths

fragments min max mean median
fragments 173914669 1 5038 170.48 151
global fragment-length histogram

Files

Filename Size md5
98123d9e5e7a10180d2694f55c4f538179489b6e.gz 1.66 GB b9c5cd047e6eeb6d766242bdef783900
98123d9e5e7a10180d2694f55c4f538179489b6e.gz.tbi 991.23 KB da266d765fa899e2a33d0843ef8e872b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b321bc443f0d50d91379d1883c6230bc
statistics/