Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/99c5541784f21a3a3c4139e27763959772a6b050content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 99c5541784f21a3a3c4139e27763959772a6b050
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 99c5541784f21a3a3c4139e27763959772a6b050
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2269_1_F06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCGATGCAGTGCACGC-2269_1_F06, TAGAGCCGTAACTACG-2269_1_F06, TAACCAGGTATTGTGG-2269_1_F06, TATTAGGTCTTGTTCG-2269_1_F06, CGGACCTAGGCTACTG-2269_1_F06 (top 5 of 6015 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
307,032,581
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 307032581
chr1 27019520
chr2 23818952
chr3 19808465
chr4 15950881
chr5 16782027
chr6 17033057
chr7 16323609
chr8 13883739
chr9 12746388
chr10 14296476
chr11 16210563
chr12 14994857
chr13 8396474
chr14 10257085
chr15 9408102
chr16 11325357
chr17 13207607
chr18 7096538
chr19 11722264
chr20 8054182
chr21 3674127
chr22 6397521
chrX 8525797
chrY 25993
GL000009.2 1819
GL000194.1 12690
GL000195.1 10089
GL000205.2 18692
GL000213.1 231
GL000218.1 3156
GL000219.1 14797
KI270711.1 543
KI270713.1 4552
KI270721.1 343
KI270726.1 34
KI270727.1 845
KI270728.1 4075
KI270731.1 514
KI270734.1 620

Fragment lengths

fragments min max mean median
fragments 307032581 1 5041 161.28 141
global fragment-length histogram

Files

Filename Size md5
99c5541784f21a3a3c4139e27763959772a6b050.gz 2.91 GB b15f03fc6e0b5b2629b6c0780e5eae3a
99c5541784f21a3a3c4139e27763959772a6b050.gz.tbi 1.31 MB 7ee844feb71f6c0db0e60f35e8acf03d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1d7ab3c5b54db347aa1fc89579783f15
statistics/