Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/9ac12a6b2dd7e9d3556cb4019656f74cc9749675content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 9ac12a6b2dd7e9d3556cb4019656f74cc9749675
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 9ac12a6b2dd7e9d3556cb4019656f74cc9749675
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2349_C08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAAGGCTAGCAAGGTA-2349_C08, TACTGGCCAACCTAAT-2349_C08, GCCATGATCTGCAAGT-2349_C08, GAGCAAATCAGGCCTA-2349_C08, GCAAGTGCACTGACTA-2349_C08 (top 5 of 4133 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
146,027,590
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 146027590
chr1 13227628
chr2 11180401
chr3 9326027
chr4 7262585
chr5 7816845
chr6 8040443
chr7 7711237
chr8 6526463
chr9 6113932
chr10 6806977
chr11 7850728
chr12 7173800
chr13 3906783
chr14 4930463
chr15 4553613
chr16 5486438
chr17 6666002
chr18 3232169
chr19 6173950
chr20 3945667
chr21 1714618
chr22 3096699
chrX 3072049
chrY 183964
GL000009.2 409
GL000194.1 2597
GL000195.1 4994
GL000205.2 8294
GL000213.1 41
GL000218.1 1076
GL000219.1 5775
KI270711.1 283
KI270713.1 3586
KI270721.1 140
KI270726.1 18
KI270727.1 108
KI270728.1 351
KI270731.1 78
KI270734.1 359

Fragment lengths

fragments min max mean median
fragments 146027590 1 5040 171.67 157
global fragment-length histogram

Files

Filename Size md5
9ac12a6b2dd7e9d3556cb4019656f74cc9749675.gz 1.37 GB 17cd58aa53369fc7ca245b8e15dc22f8
9ac12a6b2dd7e9d3556cb4019656f74cc9749675.gz.tbi 890.22 KB 3eab2d615ebe133f0d7670f5b1894f58
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b5956f421c42df82cc54657510e0feb0
statistics/