Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/9df076b587ec0d9bfbd6e52976ebccfad78972a7content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library 9df076b587ec0d9bfbd6e52976ebccfad78972a7
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 9df076b587ec0d9bfbd6e52976ebccfad78972a7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2459_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CTCCTGAGTGTTTGCT-2459_B05, ATCCCGCGTAACGGGA-2459_B05, GGCTAGTGTTGGCGTG-2459_B05, GCTAGTGTCCTTAGGG-2459_B05, GCAGGAAGTTCGCTTG-2459_B05 (top 5 of 4282 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
236,355,256
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 236355256
chr1 21160826
chr2 18390394
chr3 15269689
chr4 12009300
chr5 12991660
chr6 13056704
chr7 12572465
chr8 10689601
chr9 10026003
chr10 11079326
chr11 12585560
chr12 11523299
chr13 6510961
chr14 7945661
chr15 7389432
chr16 8715016
chr17 10412069
chr18 5343935
chr19 9181544
chr20 6287836
chr21 2860498
chr22 4913722
chrX 5023870
chrY 363369
GL000009.2 1804
GL000194.1 4104
GL000195.1 5414
GL000205.2 12950
GL000213.1 10
GL000218.1 4978
GL000219.1 15235
KI270711.1 808
KI270713.1 4930
KI270721.1 202
KI270726.1 36
KI270727.1 336
KI270728.1 621
KI270731.1 140
KI270734.1 948

Fragment lengths

fragments min max mean median
fragments 236355256 1 5040 188.34 160
global fragment-length histogram

Files

Filename Size md5
9df076b587ec0d9bfbd6e52976ebccfad78972a7.gz 2.18 GB ef5312876a49756bed688935ef0020ca
9df076b587ec0d9bfbd6e52976ebccfad78972a7.gz.tbi 1.1 MB a5855aa60dcab271bb7d8d98b4398c2c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c7c4b3bc3913ac131b06b637bd36a383
statistics/