Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a26d08904b8a440c93694baea94a094ccddb0474content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library a26d08904b8a440c93694baea94a094ccddb0474
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a26d08904b8a440c93694baea94a094ccddb0474
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2370_C03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGAGCAAGTCATGCCC-2370_C03, TGTCCTTCACGGTTTA-2370_C03, CTGGTCAAGAAGGTGC-2370_C03, GCTGTACCATAGCAGG-2370_C03, TTACGTTTCTAGCGTG-2370_C03 (top 5 of 4911 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
311,454,743
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 311454743
chr1 27672432
chr2 24570483
chr3 20516969
chr4 16389141
chr5 17382339
chr6 17404629
chr7 16893910
chr8 14136485
chr9 12770944
chr10 14507964
chr11 16528134
chr12 15284510
chr13 8462040
chr14 10527223
chr15 9811301
chr16 11599641
chr17 13276177
chr18 7249951
chr19 11356683
chr20 8214194
chr21 3585503
chr22 6341372
chrX 6509731
chrY 411448
GL000009.2 846
GL000194.1 5378
GL000195.1 7626
GL000205.2 15802
GL000213.1 102
GL000218.1 2286
GL000219.1 11653
KI270711.1 658
KI270713.1 4987
KI270721.1 244
KI270726.1 39
KI270727.1 179
KI270728.1 893
KI270731.1 202
KI270734.1 644

Fragment lengths

fragments min max mean median
fragments 311454743 1 5040 198.14 167
global fragment-length histogram

Files

Filename Size md5
a26d08904b8a440c93694baea94a094ccddb0474.gz 2.89 GB 50e97d99202859d8f12bcb6b82cea975
a26d08904b8a440c93694baea94a094ccddb0474.gz.tbi 1.28 MB 002b0585e7daf51c3d929a92a83b98e5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB baf44a703c1bd93741420f398315882f
statistics/