Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a3aa68f149920e743bbf1064298870a65debb845content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library a3aa68f149920e743bbf1064298870a65debb845
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a3aa68f149920e743bbf1064298870a65debb845
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1468_A09
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGGTCAAAGGTGTCCA-1468_A09, AGTAACGAGACAGGCG-1468_A09, TTCGTTAGTTCGCTTG-1468_A09, TTGAGGCGTCATTAGG-1468_A09, CTTAAGGGTGTAACCA-1468_A09 (top 5 of 2477 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
59,984,994
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 59984994
chr1 5758953
chr2 4521070
chr3 3701598
chr4 2625912
chr5 3057385
chr6 3209762
chr7 2972840
chr8 2441172
chr9 2764127
chr10 2938541
chr11 3390018
chr12 2772242
chr13 1437018
chr14 2035868
chr15 1956895
chr16 2327402
chr17 3140255
chr18 1239064
chr19 2722933
chr20 1657241
chr21 692200
chr22 1421754
chrX 1129419
chrY 59091
GL000009.2 214
GL000194.1 1944
GL000195.1 2292
GL000205.2 2442
GL000213.1 13
GL000218.1 625
GL000219.1 1946
KI270711.1 165
KI270713.1 2208
KI270721.1 25
KI270726.1 3
KI270727.1 60
KI270728.1 61
KI270731.1 39
KI270734.1 197

Fragment lengths

fragments min max mean median
fragments 59984994 1 5040 221.15 175
global fragment-length histogram

Files

Filename Size md5
a3aa68f149920e743bbf1064298870a65debb845.gz 585.54 MB ca26f082b34cb4dc3cf5ebeb037252dc
a3aa68f149920e743bbf1064298870a65debb845.gz.tbi 654.51 KB 58922e6a123e6c18d767ebee0663c524
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e6a0140a5bf4c8c5ede78e282079d705
statistics/