Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a815c0f5478895818d29d8180c2166a1e32137eacontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library a815c0f5478895818d29d8180c2166a1e32137ea
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a815c0f5478895818d29d8180c2166a1e32137ea
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 930_D05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GATGCATTCATCAGTA-930_D05, AGGATGTCACCTGTAA-930_D05, CTGTTGGAGGCGAATA-930_D05, GCGGTTATCTTAGGGT-930_D05, CTATGAGGTAAGCTTG-930_D05 (top 5 of 6207 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
243,914,062
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 243914062
chr1 21387096
chr2 19669662
chr3 16316742
chr4 13378067
chr5 14141013
chr6 13864363
chr7 13420811
chr8 11322518
chr9 9933273
chr10 11229661
chr11 12926477
chr12 12260890
chr13 6769869
chr14 8223394
chr15 7335407
chr16 8381676
chr17 9901164
chr18 5773830
chr19 8267029
chr20 6208208
chr21 2777197
chr22 4843263
chrX 5240353
chrY 284537
GL000009.2 628
GL000194.1 7541
GL000195.1 5942
GL000205.2 11092
GL000213.1 138
GL000218.1 3031
GL000219.1 19587
KI270711.1 411
KI270713.1 3081
KI270721.1 91
KI270726.1 487
KI270727.1 430
KI270728.1 4211
KI270731.1 353
KI270734.1 539

Fragment lengths

fragments min max mean median
fragments 243914062 1 5041 189.87 167
global fragment-length histogram

Files

Filename Size md5
a815c0f5478895818d29d8180c2166a1e32137ea.gz 2.33 GB 14f731ef82cf2e5fddfe0b0686a11e60
a815c0f5478895818d29d8180c2166a1e32137ea.gz.tbi 1.11 MB 43e5bb3f1a2c0b253c4ca948db31a705
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 80dd593d2b4ddd3cc16eac6cbfde9f78
statistics/