Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/abcc10d49a1c92085f56c60edc0af520d9a31fe9content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library abcc10d49a1c92085f56c60edc0af520d9a31fe9
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: abcc10d49a1c92085f56c60edc0af520d9a31fe9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2495_B08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCACATAAGGGCCATC-2495_B08, TTAGCAATCAAACCTA-2495_B08, CGTTTCTCATCGTTCT-2495_B08, TGAGTGAAGCCTAATA-2495_B08, AAAGGCTCAGTTTCTC-2495_B08 (top 5 of 5082 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
229,420,795
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 229420795
chr1 20862961
chr2 17809723
chr3 14650083
chr4 11262402
chr5 12236224
chr6 12667853
chr7 12209073
chr8 10043880
chr9 9727786
chr10 10709158
chr11 12329332
chr12 11210598
chr13 6028266
chr14 7802547
chr15 7235865
chr16 8767068
chr17 10584881
chr18 5090868
chr19 9415230
chr20 6156089
chr21 2689962
chr22 4972440
chrX 4602319
chrY 309223
GL000009.2 1148
GL000194.1 3775
GL000195.1 5247
GL000205.2 11094
GL000213.1 6
GL000218.1 4591
GL000219.1 13806
KI270711.1 727
KI270713.1 4811
KI270721.1 186
KI270726.1 35
KI270727.1 209
KI270728.1 426
KI270731.1 109
KI270734.1 794

Fragment lengths

fragments min max mean median
fragments 229420795 1 5035 175.43 160
global fragment-length histogram

Files

Filename Size md5
abcc10d49a1c92085f56c60edc0af520d9a31fe9.gz 2.14 GB 78be2167ed12b94bd861dee77319eceb
abcc10d49a1c92085f56c60edc0af520d9a31fe9.gz.tbi 1.07 MB cd48e6df55241aeebf6919b94bfd32cb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 82133cf2a3007a3800d6e6e4736e30d9
statistics/