Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/acdb5ce99c02206bf9877de242b4b66508d93252content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library acdb5ce99c02206bf9877de242b4b66508d93252
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: acdb5ce99c02206bf9877de242b4b66508d93252
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 853_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACCAGGGAGCGATAAG-853_A07, AGTCAATGTAACGGGA-853_A07, GCGATTTAGCTTAACA-853_A07, AGAAGGTGTTGTGATG-853_A07, TATGGTCAGCAGGTGG-853_A07 (top 5 of 1649 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
79,002,867
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 79002867
chr1 7230429
chr2 5895358
chr3 4928135
chr4 3744819
chr5 4132331
chr6 4408819
chr7 3963369
chr8 3371648
chr9 3406267
chr10 3738720
chr11 4217647
chr12 3878527
chr13 2033218
chr14 2631253
chr15 2487038
chr16 2931729
chr17 3915530
chr18 1683794
chr19 3507246
chr20 2106177
chr21 938367
chr22 1739262
chrX 2082810
chrY 6427
GL000009.2 591
GL000194.1 1647
GL000195.1 3441
GL000205.2 5716
GL000213.1 49
GL000218.1 1236
GL000219.1 6638
KI270711.1 246
KI270713.1 2099
KI270721.1 44
KI270726.1 56
KI270727.1 152
KI270728.1 1755
KI270731.1 61
KI270734.1 216

Fragment lengths

fragments min max mean median
fragments 79002867 1 5026 197.82 166
global fragment-length histogram

Files

Filename Size md5
acdb5ce99c02206bf9877de242b4b66508d93252.gz 706.18 MB 460d582ff16f5127b4558016e840144c
acdb5ce99c02206bf9877de242b4b66508d93252.gz.tbi 695.49 KB b62b21176048c745ccb39fbe35f89f79
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0f055cb98debecb4c06ba52509ac0e08
statistics/