Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/afb4679ffa44415f2ff2ad4b4f74a544f89481d9content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library afb4679ffa44415f2ff2ad4b4f74a544f89481d9
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: afb4679ffa44415f2ff2ad4b4f74a544f89481d9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2468_F02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGTAGGAGTCACAGCG-2468_F02, AAAGGTTAGAATGACG-2468_F02, GATTGCGTCGGCCATA-2468_F02, CCATAAATCCTTCTAG-2468_F02, TCAGTAGGTACCGAAC-2468_F02 (top 5 of 2803 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
156,953,856
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 156953856
chr1 14233350
chr2 12283623
chr3 10160476
chr4 7943351
chr5 8564679
chr6 8627336
chr7 8275096
chr8 7217898
chr9 6557228
chr10 7429209
chr11 8371143
chr12 7646335
chr13 4318876
chr14 5280330
chr15 4933676
chr16 5756864
chr17 6940767
chr18 3555397
chr19 5896780
chr20 4257698
chr21 1815148
chr22 3274690
chrX 3352962
chrY 227946
GL000009.2 962
GL000194.1 2456
GL000195.1 3871
GL000205.2 9136
GL000213.1 4
GL000218.1 2701
GL000219.1 9078
KI270711.1 498
KI270713.1 2836
KI270721.1 133
KI270726.1 19
KI270727.1 171
KI270728.1 410
KI270731.1 87
KI270734.1 636

Fragment lengths

fragments min max mean median
fragments 156953856 1 5039 188.49 161
global fragment-length histogram

Files

Filename Size md5
afb4679ffa44415f2ff2ad4b4f74a544f89481d9.gz 1.47 GB fe4d0a371d8dbc8683e3767006e6145e
afb4679ffa44415f2ff2ad4b4f74a544f89481d9.gz.tbi 926.17 KB 1c9e9c90d8fadd8af54f22ecb77f5adb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 97e8dddffb2a1a01b82db4642e5b3735
statistics/