Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b05ad8d2d29b0bc08241c6ac829d04aa2321ba3dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2058_C03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCGCATTGTGAGCACT-2058_C03, TTGAGGCGTGCTGTAA-2058_C03, CGTGAGGAGACAAACG-2058_C03, GGTTGGTGTTCACCCA-2058_C03, ACCTTCATCATCACTT-2058_C03 (top 5 of 3988 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
96,314,197
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 96314197
chr1 8604852
chr2 7337748
chr3 6105601
chr4 5003055
chr5 5256684
chr6 5356122
chr7 5035720
chr8 4411162
chr9 4207762
chr10 4549357
chr11 5122037
chr12 4626732
chr13 2739845
chr14 3183845
chr15 2885334
chr16 3449464
chr17 4244246
chr18 2272538
chr19 4000544
chr20 2500739
chr21 1224133
chr22 1867815
chrX 2136958
chrY 167100
GL000009.2 817
GL000194.1 2448
GL000195.1 4289
GL000205.2 6043
GL000213.1 13
GL000218.1 857
GL000219.1 3807
KI270711.1 136
KI270713.1 3426
KI270721.1 117
KI270726.1 96
KI270727.1 327
KI270728.1 2176
KI270731.1 54
KI270734.1 198

Fragment lengths

fragments min max mean median
fragments 96314197 1 5041 161.12 128
global fragment-length histogram

Files

Filename Size md5
b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d.gz 927.31 MB 65bbdc3f3353fe8beedfc1c829bd32cb
b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d.gz.tbi 751.73 KB 87d90310a31ffeaf7ab6f98c6890c4eb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c7af2827a2dbcafb15898fcb4ae33e44
statistics/