Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b54d70460e37d81d44164361a342a40835bee806content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b54d70460e37d81d44164361a342a40835bee806
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b54d70460e37d81d44164361a342a40835bee806
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2414_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGTCTTGAGCAAGACA-2414_E01, TTGTTGTTCCAATTAG-2414_E01, AAGACATAGTTGTCAA-2414_E01, ACTTATCTCAGTTCCC-2414_E01, ACCAATATCAGCAAAG-2414_E01 (top 5 of 1601 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
84,919,111
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 84919111
chr1 7674897
chr2 6636853
chr3 5413815
chr4 4182111
chr5 4598216
chr6 4599305
chr7 4419888
chr8 3834991
chr9 3649293
chr10 4072457
chr11 4573367
chr12 4112324
chr13 2222732
chr14 2785018
chr15 2670287
chr16 3088106
chr17 3844603
chr18 1940866
chr19 3172930
chr20 2336956
chr21 992503
chr22 1799561
chrX 2272195
chrY 7127
GL000009.2 521
GL000194.1 3050
GL000195.1 2667
GL000205.2 4746
GL000213.1 62
GL000218.1 905
GL000219.1 3380
KI270711.1 173
KI270713.1 1318
KI270721.1 124
KI270726.1 6
KI270727.1 304
KI270728.1 1149
KI270731.1 131
KI270734.1 174

Fragment lengths

fragments min max mean median
fragments 84919111 1 5031 175.91 155
global fragment-length histogram

Files

Filename Size md5
b54d70460e37d81d44164361a342a40835bee806.gz 804.91 MB 7298b0471d093517ab66e5154e4c3b5b
b54d70460e37d81d44164361a342a40835bee806.gz.tbi 720.65 KB f5b6ffe7bcfa39ccc9f36770ec237646
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b2a332e3636eb2c5d56b0e99a02986be
statistics/