Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b5b6a8b021a34e710250ed4c215b193e5c9a590bcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b5b6a8b021a34e710250ed4c215b193e5c9a590b
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b5b6a8b021a34e710250ed4c215b193e5c9a590b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2229_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAGGCTTGTCCTAATC-2229_B06, GACCTGCAGAGGAGTC-2229_B06, TGAAGGATCATCAGTA-2229_B06, AGTGCACGTGGTTAGC-2229_B06, AGCGGATAGCGGCTGT-2229_B06 (top 5 of 3989 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
195,414,766
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 195414766
chr1 17581907
chr2 15280741
chr3 12733084
chr4 9798959
chr5 10665943
chr6 10775035
chr7 10109995
chr8 8814520
chr9 8369283
chr10 9314936
chr11 10407811
chr12 9527630
chr13 5225533
chr14 6677621
chr15 6072025
chr16 7051513
chr17 8781184
chr18 4412313
chr19 7206910
chr20 5189003
chr21 2269483
chr22 4026924
chrX 5075343
chrY 10059
GL000009.2 772
GL000194.1 5483
GL000195.1 6445
GL000205.2 9495
GL000213.1 117
GL000218.1 1334
GL000219.1 7253
KI270711.1 327
KI270713.1 2864
KI270721.1 220
KI270726.1 12
KI270727.1 555
KI270728.1 1546
KI270731.1 238
KI270734.1 350

Fragment lengths

fragments min max mean median
fragments 195414766 1 5040 176.56 157
global fragment-length histogram

Files

Filename Size md5
b5b6a8b021a34e710250ed4c215b193e5c9a590b.gz 1.86 GB dc634126b7a547d6e73f3a4e576f6809
b5b6a8b021a34e710250ed4c215b193e5c9a590b.gz.tbi 1.02 MB 4daa69cefa57b2a97147978002078979
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f3546837926dc1185fef0a0f3fb5af42
statistics/