Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b6b985ccdb0fde8b5356ddbc184087b1a88ae90ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b6b985ccdb0fde8b5356ddbc184087b1a88ae90c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b6b985ccdb0fde8b5356ddbc184087b1a88ae90c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2479_B08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCGCGATTCAATGAGG-2479_B08, GCAATGTTCGAAGTGA-2479_B08, CTAAATGTCGGTTCCT-2479_B08, CATAGCTAGGTCCTAG-2479_B08, TGCTTGCTCATTTGCT-2479_B08 (top 5 of 3524 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
191,451,888
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 191451888
chr1 17159787
chr2 15078671
chr3 12411737
chr4 9804510
chr5 10447917
chr6 10580510
chr7 10287961
chr8 8613656
chr9 8043835
chr10 8948202
chr11 10188396
chr12 9414235
chr13 5162431
chr14 6468013
chr15 5986980
chr16 7098062
chr17 8432175
chr18 4340526
chr19 7314577
chr20 5086633
chr21 2255388
chr22 4016300
chrX 3988127
chrY 285718
GL000009.2 1112
GL000194.1 3027
GL000195.1 3721
GL000205.2 9265
GL000213.1 7
GL000218.1 3669
GL000219.1 11109
KI270711.1 625
KI270713.1 3354
KI270721.1 130
KI270726.1 31
KI270727.1 232
KI270728.1 462
KI270731.1 95
KI270734.1 702

Fragment lengths

fragments min max mean median
fragments 191451888 1 5039 202 168
global fragment-length histogram

Files

Filename Size md5
b6b985ccdb0fde8b5356ddbc184087b1a88ae90c.gz 1.79 GB 0e4663576f5d71ed10039a148d2be030
b6b985ccdb0fde8b5356ddbc184087b1a88ae90c.gz.tbi 1004.29 KB 1a31659f7b13e2a59971758db9487be1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f5cf46868e51c23341567cb87eab5baa
statistics/