Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b7e4a8795f596fc59901316bfe7afcbd06b91b45content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b7e4a8795f596fc59901316bfe7afcbd06b91b45
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b7e4a8795f596fc59901316bfe7afcbd06b91b45
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2357_E03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGAACCGCAATAACCT-2357_E03, AGAGAAGCAGCATGGA-2357_E03, TGTCCTGGTTGTTCAC-2357_E03, GTTGTGAGTGTCCAAA-2357_E03, TTCAGTTTCCCTCTAA-2357_E03 (top 5 of 4204 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
223,237,120
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 223237120
chr1 20232230
chr2 17342029
chr3 14388582
chr4 11192916
chr5 12124464
chr6 12352687
chr7 11744655
chr8 9950813
chr9 9314705
chr10 10426871
chr11 11832465
chr12 11017992
chr13 6048202
chr14 7545960
chr15 6957403
chr16 8257543
chr17 10084003
chr18 5009651
chr19 9077819
chr20 5988994
chr21 2625962
chr22 4596655
chrX 4793579
chrY 292292
GL000009.2 594
GL000194.1 3326
GL000195.1 6588
GL000205.2 11356
GL000213.1 66
GL000218.1 1323
GL000219.1 8253
KI270711.1 560
KI270713.1 5125
KI270721.1 192
KI270726.1 16
KI270727.1 140
KI270728.1 472
KI270731.1 161
KI270734.1 476

Fragment lengths

fragments min max mean median
fragments 223237120 1 5031 200.85 166
global fragment-length histogram

Files

Filename Size md5
b7e4a8795f596fc59901316bfe7afcbd06b91b45.gz 2.07 GB 3ab8afc81ab9dced6cacecc92d6fe4ed
b7e4a8795f596fc59901316bfe7afcbd06b91b45.gz.tbi 1.08 MB b5cb2c878957be7d7e0d7858eceb21a9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 663031c33d07aee1d2b66815106b9029
statistics/