Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2263_C01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAGGGCTTCCACCCTG-2263_C01, TTAGGCTAGGCGGGTA-2263_C01, AGGAAACGTTTGGGTA-2263_C01, GAGGTTAAGCTCATAA-2263_C01, TCAGCCTTCGTTTCCA-2263_C01 (top 5 of 3833 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
151,683,170
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 151683170
chr1 13986655
chr2 11506799
chr3 9366756
chr4 7033516
chr5 7882650
chr6 8302763
chr7 7680038
chr8 6349350
chr9 6761002
chr10 7250117
chr11 8232535
chr12 7183758
chr13 3853148
chr14 5102255
chr15 4845385
chr16 5754014
chr17 7515021
chr18 3292839
chr19 6692405
chr20 4073305
chr21 1845771
chr22 3339461
chrX 3786894
chrY 10120
GL000009.2 770
GL000194.1 5283
GL000195.1 5950
GL000205.2 10131
GL000213.1 102
GL000218.1 1261
GL000219.1 7361
KI270711.1 386
KI270713.1 2883
KI270721.1 181
KI270726.1 15
KI270727.1 540
KI270728.1 1379
KI270731.1 138
KI270734.1 233

Fragment lengths

fragments min max mean median
fragments 151683170 1 5035 167.45 151
global fragment-length histogram

Files

Filename Size md5
b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074.gz 1.41 GB 3baa4d1a4edf42b01b289b9258d4cd81
b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074.gz.tbi 895.0 KB 820d89546748ee35715d8c7daf0f3be7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b49cf5e5987636567fd0394091678964
statistics/