Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ba7c3a612d8e316f481b34e3ce95341f9e5dff56content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library ba7c3a612d8e316f481b34e3ce95341f9e5dff56
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ba7c3a612d8e316f481b34e3ce95341f9e5dff56
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2233_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTATCCTAGAGAAGGG-2233_B02, ACTTGCACAGGGAGCT-2233_B02, GTTTGCTGTTACTTCA-2233_B02, GCTTAGTAGTGGCGGA-2233_B02, ACGGTACGTTGGATAT-2233_B02 (top 5 of 6723 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
344,467,827
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 344467827
chr1 30410409
chr2 26695428
chr3 22267993
chr4 17735953
chr5 18838710
chr6 19116052
chr7 18342549
chr8 15511903
chr9 14214417
chr10 15863629
chr11 18467713
chr12 16896435
chr13 9255638
chr14 11569726
chr15 10527169
chr16 12853006
chr17 15050382
chr18 7890200
chr19 13606777
chr20 9067122
chr21 4081941
chr22 7256821
chrX 8852592
chrY 19592
GL000009.2 1416
GL000194.1 13285
GL000195.1 11476
GL000205.2 17875
GL000213.1 174
GL000218.1 2958
GL000219.1 17412
KI270711.1 472
KI270713.1 5172
KI270721.1 394
KI270726.1 34
KI270727.1 796
KI270728.1 3106
KI270731.1 449
KI270734.1 651

Fragment lengths

fragments min max mean median
fragments 344467827 1 5041 151.7 141
global fragment-length histogram

Files

Filename Size md5
ba7c3a612d8e316f481b34e3ce95341f9e5dff56.gz 3.2 GB e4e16c3df1971389a6a9e5170e25eb28
ba7c3a612d8e316f481b34e3ce95341f9e5dff56.gz.tbi 1.36 MB 7bdd28aa913198fdf5263d3ed644c05e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 7f8a08f45e7b02587c573ce4aebbad78
statistics/