Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/bab5b4c4910fa2eaac1b009541415a289c868f78content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library bab5b4c4910fa2eaac1b009541415a289c868f78
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: bab5b4c4910fa2eaac1b009541415a289c868f78
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2471_A04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGTACGGGTTCATCTA-2471_A04, TCCTAGTGTGTTGCTT-2471_A04, GACTCACCAGAGGGAG-2471_A04, TTAAGTGTCTGTGCCT-2471_A04, GAAGCCTGTCACAGAC-2471_A04 (top 5 of 5331 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
161,633,372
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 161633372
chr1 14604253
chr2 12461767
chr3 10209139
chr4 8096675
chr5 8756507
chr6 8869220
chr7 8355140
chr8 7227689
chr9 7249139
chr10 7671117
chr11 8697428
chr12 7711512
chr13 4401277
chr14 5424197
chr15 4843198
chr16 5858246
chr17 7485752
chr18 3717762
chr19 6646761
chr20 4232468
chr21 1977087
chr22 3386329
chrX 3464428
chrY 248799
GL000009.2 1603
GL000194.1 3223
GL000195.1 4622
GL000205.2 9224
GL000213.1 9
GL000218.1 3599
GL000219.1 9064
KI270711.1 670
KI270713.1 3951
KI270721.1 161
KI270726.1 25
KI270727.1 291
KI270728.1 423
KI270731.1 96
KI270734.1 521

Fragment lengths

fragments min max mean median
fragments 161633372 1 5037 180.5 153
global fragment-length histogram

Files

Filename Size md5
bab5b4c4910fa2eaac1b009541415a289c868f78.gz 1.52 GB f6d0a706c26f3fe796cfa604219aafd4
bab5b4c4910fa2eaac1b009541415a289c868f78.gz.tbi 933.29 KB 816a7493b37824971be709750281ab84
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 58099724753005f9657909d43a89b4c2
statistics/