Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/beda748f983d3a18484a0930f955bbec66f3c34bcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library beda748f983d3a18484a0930f955bbec66f3c34b
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: beda748f983d3a18484a0930f955bbec66f3c34b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2271_C08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGTCAGGCAATATACC-2271_C08, CAGATTCAGCGAGGTG-2271_C08, GGTACTAGTTATCCGT-2271_C08, TCTAGCGAGACAACGA-2271_C08, GATGGACAGAGGAGGA-2271_C08 (top 5 of 4144 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
228,159,629
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 228159629
chr1 20318389
chr2 17707726
chr3 14630448
chr4 11465080
chr5 12368119
chr6 12579448
chr7 11883738
chr8 10268131
chr9 9697910
chr10 10737054
chr11 12182686
chr12 11058680
chr13 6102990
chr14 7671973
chr15 7064152
chr16 8458862
chr17 10244401
chr18 5167180
chr19 8840556
chr20 6086171
chr21 2708321
chr22 4825624
chrX 6027301
chrY 16009
GL000009.2 1167
GL000194.1 7800
GL000195.1 7143
GL000205.2 12393
GL000213.1 151
GL000218.1 2146
GL000219.1 10137
KI270711.1 420
KI270713.1 3257
KI270721.1 266
KI270726.1 29
KI270727.1 603
KI270728.1 2408
KI270731.1 295
KI270734.1 465

Fragment lengths

fragments min max mean median
fragments 228159629 1 5039 172.38 153
global fragment-length histogram

Files

Filename Size md5
beda748f983d3a18484a0930f955bbec66f3c34b.gz 2.14 GB c840c963755b49f38ebe09cf5bacb5b6
beda748f983d3a18484a0930f955bbec66f3c34b.gz.tbi 1.09 MB 69f108cf6ea3ebb1bdcc0390402c58fa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 7f9c1f8330429e9659a701d16aa1517f
statistics/