Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/bf3e2e07524b2d2fdcb2268f723718390ecd8443content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library bf3e2e07524b2d2fdcb2268f723718390ecd8443
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: bf3e2e07524b2d2fdcb2268f723718390ecd8443
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2474_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GTCTATGCAGGCGAGT-2474_B05, CACTTAAAGACTATTG-2474_B05, GCTGTGATCAGAAACG-2474_B05, TCAGGTCCAGGCAAGC-2474_B05, AGTGTGGCACCTGTAA-2474_B05 (top 5 of 4090 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
144,163,303
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 144163303
chr1 13547743
chr2 10940922
chr3 8889619
chr4 6617119
chr5 7499505
chr6 7734063
chr7 7265283
chr8 6062439
chr9 6600169
chr10 6975139
chr11 7910763
chr12 6773368
chr13 3601730
chr14 4875720
chr15 4592794
chr16 5533107
chr17 7305269
chr18 3068390
chr19 6474734
chr20 3908090
chr21 1667714
chr22 3285001
chrX 2838148
chrY 166829
GL000009.2 731
GL000194.1 2289
GL000195.1 3821
GL000205.2 6949
GL000213.1 4
GL000218.1 2662
GL000219.1 8041
KI270711.1 580
KI270713.1 3530
KI270721.1 115
KI270726.1 31
KI270727.1 150
KI270728.1 255
KI270731.1 69
KI270734.1 418

Fragment lengths

fragments min max mean median
fragments 144163303 1 5032 193.4 165
global fragment-length histogram

Files

Filename Size md5
bf3e2e07524b2d2fdcb2268f723718390ecd8443.gz 1.34 GB 8ebe21479faf448e3edbc11678ac7867
bf3e2e07524b2d2fdcb2268f723718390ecd8443.gz.tbi 877.62 KB 40d4d5d81a77453302448a49efa233a6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 933bb78c17ad145bc28ab43cff5f1e76
statistics/