Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/bfc3295e69e7e7b19c7e1676e9b9cd28b2ee822ccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library bfc3295e69e7e7b19c7e1676e9b9cd28b2ee822c
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: bfc3295e69e7e7b19c7e1676e9b9cd28b2ee822c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2368_F02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCACTGACAGGCTAGA-2368_F02, GTGCAAGCAATGAATG-2368_F02, CACAATATCCTCATCA-2368_F02, CGTGCACAGGATTTGC-2368_F02, TTTGCGGAGGTGAAGC-2368_F02 (top 5 of 4523 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
281,137,008
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 281137008
chr1 24864794
chr2 22109350
chr3 18331594
chr4 14806809
chr5 15589124
chr6 15743686
chr7 15286507
chr8 12706295
chr9 11529460
chr10 13105637
chr11 14902831
chr12 13921697
chr13 7586677
chr14 9522548
chr15 8790186
chr16 10533793
chr17 11985801
chr18 6510945
chr19 10590116
chr20 7429289
chr21 3296119
chr22 5767277
chrX 5795985
chrY 377312
GL000009.2 842
GL000194.1 5793
GL000195.1 7766
GL000205.2 16605
GL000213.1 94
GL000218.1 2291
GL000219.1 11856
KI270711.1 586
KI270713.1 5023
KI270721.1 267
KI270726.1 40
KI270727.1 181
KI270728.1 971
KI270731.1 241
KI270734.1 620

Fragment lengths

fragments min max mean median
fragments 281137008 1 5041 174.05 156
global fragment-length histogram

Files

Filename Size md5
bfc3295e69e7e7b19c7e1676e9b9cd28b2ee822c.gz 2.6 GB c19fda02fcb37eea04d362c7c05a6eb7
bfc3295e69e7e7b19c7e1676e9b9cd28b2ee822c.gz.tbi 1.21 MB acb4708155b6bfa9d560fa781c0d6b4b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB a783307364d2fc94318a87eab3178391
statistics/