Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c570876fa4a9fac69a6f5513f87a8fd63b86eaa4content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library c570876fa4a9fac69a6f5513f87a8fd63b86eaa4
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c570876fa4a9fac69a6f5513f87a8fd63b86eaa4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 891_A06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTAAGGTGTCCGTGAG-891_A06, TGAAACTGTTGCGCGA-891_A06, TCCAGGTCAAGGAATC-891_A06, CGAATCTAGCTGCACA-891_A06, AAGCTATGTGTAACCA-891_A06 (top 5 of 1816 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
105,653,786
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 105653786
chr1 9296724
chr2 8272976
chr3 6956878
chr4 5603371
chr5 5859728
chr6 5937778
chr7 5669695
chr8 4875728
chr9 4342185
chr10 4932178
chr11 5524307
chr12 5143208
chr13 2931688
chr14 3600371
chr15 3288939
chr16 3752190
chr17 4407556
chr18 2464592
chr19 3797108
chr20 2726432
chr21 1259219
chr22 2127905
chrX 2847903
chrY 7845
GL000009.2 804
GL000194.1 2383
GL000195.1 3152
GL000205.2 6077
GL000213.1 64
GL000218.1 1753
GL000219.1 8257
KI270711.1 338
KI270713.1 1752
KI270721.1 54
KI270726.1 108
KI270727.1 201
KI270728.1 1966
KI270731.1 171
KI270734.1 202

Fragment lengths

fragments min max mean median
fragments 105653786 1 5039 206.45 176
global fragment-length histogram

Files

Filename Size md5
c570876fa4a9fac69a6f5513f87a8fd63b86eaa4.gz 980.64 MB be0ba436eaf842e17ece9724b6e087b7
c570876fa4a9fac69a6f5513f87a8fd63b86eaa4.gz.tbi 774.56 KB 6d9ddd692f0b50b1d5663ca313925526
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e25eb04527c3d675eca220b6dad9f796
statistics/