Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c8ef9f604a1f521e81fff7c2734fff38e2961c99content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library c8ef9f604a1f521e81fff7c2734fff38e2961c99
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c8ef9f604a1f521e81fff7c2734fff38e2961c99
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2526_D01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGTAAACAGGTCGAGG-2526_D01, CGGCTCACAGAGGGAG-2526_D01, GGCCTAATCCTAGTTT-2526_D01, GTTTGTTTCTTAGCGG-2526_D01, TACAATGTCCATCAGG-2526_D01 (top 5 of 3594 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
137,134,501
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 137134501
chr1 12373155
chr2 10720009
chr3 8832655
chr4 6947846
chr5 7477080
chr6 7543061
chr7 7199089
chr8 6149759
chr9 5987756
chr10 6608618
chr11 7378198
chr12 6501195
chr13 3712681
chr14 4561375
chr15 4180993
chr16 4871877
chr17 5997615
chr18 3208999
chr19 5089357
chr20 3626698
chr21 1669386
chr22 2794083
chrX 3659679
chrY 12876
GL000009.2 1232
GL000194.1 2840
GL000195.1 3427
GL000205.2 7600
GL000213.1 114
GL000218.1 2177
GL000219.1 7071
KI270711.1 398
KI270713.1 2547
KI270721.1 151
KI270726.1 14
KI270727.1 609
KI270728.1 1753
KI270731.1 107
KI270734.1 421

Fragment lengths

fragments min max mean median
fragments 137134501 1 5011 165.58 149
global fragment-length histogram

Files

Filename Size md5
c8ef9f604a1f521e81fff7c2734fff38e2961c99.gz 1.31 GB 48aa9f38cb36a28f3a5d65924adf43b9
c8ef9f604a1f521e81fff7c2734fff38e2961c99.gz.tbi 878.49 KB 20f0d81a78e8ded6027a606755a07035
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 5b0671273c26b8470c5b8fe3af2000bc
statistics/