Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c9b036ef4c6ddb8545718e5ea3747fc20c51ebfbcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2295_D02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAAGACAAGTCAATCA-2295_D02, TGCAGGCTCTGGCATG-2295_D02, CATGCAAGTGAGACTC-2295_D02, TATCGCGAGCACAGGG-2295_D02, TTTACGCGTTATGTGG-2295_D02 (top 5 of 3828 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
216,305,014
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 216305014
chr1 18966706
chr2 17067992
chr3 14210592
chr4 11503552
chr5 12182657
chr6 12021979
chr7 11659565
chr8 9910332
chr9 8805958
chr10 10039202
chr11 11353441
chr12 10603881
chr13 5927091
chr14 7261493
chr15 6646760
chr16 7789116
chr17 8994711
chr18 5116147
chr19 7656822
chr20 5630036
chr21 2500897
chr22 4330706
chrX 6050061
chrY 16466
GL000009.2 682
GL000194.1 4945
GL000195.1 5213
GL000205.2 15472
GL000213.1 68
GL000218.1 3759
GL000219.1 19246
KI270711.1 428
KI270713.1 1731
KI270721.1 117
KI270726.1 7
KI270727.1 364
KI270728.1 6245
KI270731.1 168
KI270734.1 406

Fragment lengths

fragments min max mean median
fragments 216305014 1 5040 174.06 157
global fragment-length histogram

Files

Filename Size md5
c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb.gz 2.03 GB fbeb7de9dd2da6035b8f89e78142ba71
c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb.gz.tbi 1.07 MB bd4d47f464aca845a41b09c250c3c5d5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b355f7466267ce5c18302dadbfb65264
statistics/