Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cc261cca7def7c500a74249b493c56c00247da04content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library cc261cca7def7c500a74249b493c56c00247da04
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cc261cca7def7c500a74249b493c56c00247da04
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2508_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGCAAATCACCTGCCT-2508_A07, ATGCCTGAGGAAACTG-2508_A07, GACGTAAAGTAGCGGG-2508_A07, GAGGCCTTCCGCAAGC-2508_A07, GCAATAGAGCTGTACG-2508_A07 (top 5 of 5406 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
296,320,480
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 296320480
chr1 25882187
chr2 23334893
chr3 19568877
chr4 15928233
chr5 16684072
chr6 16615111
chr7 15931981
chr8 13726560
chr9 12177588
chr10 13683746
chr11 15565334
chr12 14578587
chr13 8382105
chr14 9807609
chr15 8934887
chr16 10437591
chr17 12174247
chr18 7005263
chr19 10671123
chr20 7524571
chr21 3556430
chr22 5793331
chrX 8268909
chrY 21194
GL000009.2 2110
GL000194.1 6292
GL000195.1 6369
GL000205.2 17951
GL000213.1 214
GL000218.1 4251
GL000219.1 18223
KI270711.1 634
KI270713.1 4728
KI270721.1 281
KI270726.1 11
KI270727.1 1066
KI270728.1 2950
KI270731.1 219
KI270734.1 752

Fragment lengths

fragments min max mean median
fragments 296320480 1 5039 196.19 162
global fragment-length histogram

Files

Filename Size md5
cc261cca7def7c500a74249b493c56c00247da04.gz 2.78 GB 22a97086fab9290b4d72980727d4788c
cc261cca7def7c500a74249b493c56c00247da04.gz.tbi 1.28 MB 0e163de97d5e5c19bd77216a327c3236
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 480bbd53d984317ff227f8814dcb5eaa
statistics/