Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cd0776fdb909d9aed8a553fbe8c48c567cce90c8content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library cd0776fdb909d9aed8a553fbe8c48c567cce90c8
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cd0776fdb909d9aed8a553fbe8c48c567cce90c8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2277_C04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCGTTAGCAGTAAGTA-2277_C04, AATCCCTGTTAGGTTG-2277_C04, AAAGCCCGTAATCGCA-2277_C04, CCTTGTTCAAGGTGCA-2277_C04, CATTGCGAGTTTCCGC-2277_C04 (top 5 of 1628 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
134,832,983
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 134832983
chr1 11664033
chr2 10707948
chr3 8983495
chr4 7396153
chr5 7675254
chr6 7771078
chr7 7144587
chr8 6321910
chr9 5606639
chr10 6224419
chr11 7049275
chr12 6547734
chr13 3892586
chr14 4502383
chr15 3978059
chr16 4589939
chr17 5434523
chr18 3213292
chr19 4556641
chr20 3323681
chr21 1595312
chr22 2498088
chrX 4117048
chrY 11136
GL000009.2 721
GL000194.1 4180
GL000195.1 4261
GL000205.2 7121
GL000213.1 104
GL000218.1 1191
GL000219.1 5795
KI270711.1 211
KI270713.1 1908
KI270721.1 106
KI270726.1 14
KI270727.1 285
KI270728.1 1467
KI270731.1 183
KI270734.1 223

Fragment lengths

fragments min max mean median
fragments 134832983 1 5039 207.21 169
global fragment-length histogram

Files

Filename Size md5
cd0776fdb909d9aed8a553fbe8c48c567cce90c8.gz 1.22 GB de935b1f3a38645926e29221222bd2df
cd0776fdb909d9aed8a553fbe8c48c567cce90c8.gz.tbi 866.6 KB 3496514feb69cd63e56bcd18db4b0442
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB f355975a4e29c4ad3aa37a7ba1b796f9
statistics/