Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cd124e455c046ce14e80935d78fc6b6dc5f9337fcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library cd124e455c046ce14e80935d78fc6b6dc5f9337f
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cd124e455c046ce14e80935d78fc6b6dc5f9337f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2355_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CTCAATAAGGCCGGAA-2355_A02, AGGCTAAAGGCAAGTA-2355_A02, TGTATCGCAAGGTGCA-2355_A02, TGGAACAAGCCACAAT-2355_A02, AATAGAGGTCATCATC-2355_A02 (top 5 of 5092 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
257,766,419
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 257766419
chr1 23002530
chr2 19994774
chr3 16658376
chr4 13151357
chr5 14047229
chr6 14417571
chr7 13783534
chr8 11581463
chr9 10668052
chr10 11951053
chr11 13688892
chr12 12711314
chr13 6933005
chr14 8697018
chr15 7989738
chr16 9695662
chr17 11423478
chr18 5854414
chr19 10530988
chr20 6811477
chr21 3047449
chr22 5358575
chrX 5368600
chrY 346159
GL000009.2 713
GL000194.1 5319
GL000195.1 9036
GL000205.2 16504
GL000213.1 87
GL000218.1 2051
GL000219.1 11560
KI270711.1 512
KI270713.1 6010
KI270721.1 219
KI270726.1 25
KI270727.1 155
KI270728.1 773
KI270731.1 180
KI270734.1 567

Fragment lengths

fragments min max mean median
fragments 257766419 1 5040 200.74 167
global fragment-length histogram

Files

Filename Size md5
cd124e455c046ce14e80935d78fc6b6dc5f9337f.gz 2.36 GB c46a1ceb83678337bf9015dcfe0cd7cf
cd124e455c046ce14e80935d78fc6b6dc5f9337f.gz.tbi 1.16 MB 5084eefdcf06a223bf8ca4e32b3bc441
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB c2efcedafe13d1836dd3c3c6025a835d
statistics/