Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ce33cb198c15ce3065e8bd86c86ddd87ee9e4756content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library ce33cb198c15ce3065e8bd86c86ddd87ee9e4756
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ce33cb198c15ce3065e8bd86c86ddd87ee9e4756
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2471_B04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCAATAGAGAGCCGCT-2471_B04, GCCAGGAAGTTGTCAA-2471_B04, TAGCGGCTCATTGTCT-2471_B04, CGGGACAAGCCGGTAC-2471_B04, ACTCGCGCATGTTTGG-2471_B04 (top 5 of 4838 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
138,569,789
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 138569789
chr1 12577272
chr2 10633318
chr3 8727966
chr4 6980745
chr5 7501247
chr6 7654979
chr7 7066701
chr8 6227145
chr9 6200802
chr10 6646499
chr11 7432458
chr12 6642368
chr13 3728111
chr14 4683617
chr15 4222820
chr16 5057488
chr17 6408178
chr18 3178905
chr19 5562182
chr20 3691103
chr21 1663905
chr22 2919977
chrX 2927610
chrY 203243
GL000009.2 1255
GL000194.1 2595
GL000195.1 3815
GL000205.2 7875
GL000213.1 3
GL000218.1 2986
GL000219.1 7877
KI270711.1 566
KI270713.1 2950
KI270721.1 125
KI270726.1 41
KI270727.1 219
KI270728.1 349
KI270731.1 50
KI270734.1 444

Fragment lengths

fragments min max mean median
fragments 138569789 1 5039 185.73 158
global fragment-length histogram

Files

Filename Size md5
ce33cb198c15ce3065e8bd86c86ddd87ee9e4756.gz 1.31 GB 16e39321940ac9e9cdb73b17e5b26d6e
ce33cb198c15ce3065e8bd86c86ddd87ee9e4756.gz.tbi 873.44 KB 1ed3b9c286e3dea6e454065b1549251f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1fd52ce18ebd8a204d42c3341dfac59b
statistics/