Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d07be4112755aee6622fcfe39d261d9daff374e1content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d07be4112755aee6622fcfe39d261d9daff374e1
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d07be4112755aee6622fcfe39d261d9daff374e1
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1036_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGAGCAAGTTTGAGGC-1036_B03, CCAGACTCACCTATAG-1036_B03, CGAGCGAAGGATGATG-1036_B03, CGTTAGTAGCCTCTCG-1036_B03, CGACAAGCAAGCGAGC-1036_B03 (top 5 of 6726 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
331,839,918
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 331839918
chr1 29149789
chr2 26682748
chr3 22064683
chr4 17755648
chr5 18853422
chr6 18760382
chr7 18030796
chr8 15667608
chr9 13583032
chr10 15602657
chr11 17481815
chr12 16313621
chr13 9336210
chr14 10983445
chr15 10278304
chr16 11665584
chr17 13566340
chr18 7751463
chr19 11516160
chr20 8722039
chr21 3873379
chr22 6520608
chrX 7187582
chrY 420912
GL000009.2 824
GL000194.1 9291
GL000195.1 8273
GL000205.2 13935
GL000213.1 182
GL000218.1 3263
GL000219.1 23787
KI270711.1 721
KI270713.1 4184
KI270721.1 104
KI270726.1 466
KI270727.1 596
KI270728.1 4610
KI270731.1 450
KI270734.1 1005

Fragment lengths

fragments min max mean median
fragments 331839918 1 5042 203.75 169
global fragment-length histogram

Files

Filename Size md5
d07be4112755aee6622fcfe39d261d9daff374e1.gz 3.19 GB 2f85d945f216feefb0819f7e7876035d
d07be4112755aee6622fcfe39d261d9daff374e1.gz.tbi 1.34 MB 6464a3eca61379199cee5436afe92506
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 41bd8f03f9025602e66f324de468fb63
statistics/