Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d2e2cc6e670103848c1a8dd9272297992452501acontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d2e2cc6e670103848c1a8dd9272297992452501a
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d2e2cc6e670103848c1a8dd9272297992452501a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2453_A02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGCGGATTCTAGCGAT-2453_A02, CGGATTAGTATTGGAT-2453_A02, GAGGTAGGTGTTGTGA-2453_A02, ACCAGGGAGGCTAGAA-2453_A02, CAATATGTCGAAGTGA-2453_A02 (top 5 of 3169 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
174,345,452
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 174345452
chr1 16025937
chr2 13471188
chr3 11096890
chr4 8477270
chr5 9313529
chr6 9459538
chr7 9065718
chr8 7737875
chr9 7517169
chr10 8291181
chr11 9417243
chr12 8464803
chr13 4639784
chr14 5875447
chr15 5476162
chr16 6499725
chr17 8153692
chr18 3822757
chr19 7107950
chr20 4755092
chr21 2028192
chr22 3770227
chrX 3603978
chrY 237458
GL000009.2 990
GL000194.1 2726
GL000195.1 4415
GL000205.2 8998
GL000213.1 3
GL000218.1 3160
GL000219.1 10550
KI270711.1 612
KI270713.1 3598
KI270721.1 132
KI270726.1 23
KI270727.1 192
KI270728.1 476
KI270731.1 92
KI270734.1 680

Fragment lengths

fragments min max mean median
fragments 174345452 1 5040 195.14 167
global fragment-length histogram

Files

Filename Size md5
d2e2cc6e670103848c1a8dd9272297992452501a.gz 1.6 GB 3a18dd085dc512c60f3ce115b9eff783
d2e2cc6e670103848c1a8dd9272297992452501a.gz.tbi 961.11 KB 15f4d26c36ec7a42b17f1661a6ed276d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 29fe30900d3b75f4500a9a5202b8aa69
statistics/