Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d7924909ac635d27a5aaf99c11ea0373b9c3bb07content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d7924909ac635d27a5aaf99c11ea0373b9c3bb07
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d7924909ac635d27a5aaf99c11ea0373b9c3bb07
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1959_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGTGTTACACCCACCT-1959_C02, TACGGTTAGATTGAGG-1959_C02, GACAATACAAGGCCAA-1959_C02, CTTGTAAAGGAGGTTA-1959_C02, CATAACGGTTACTTCA-1959_C02 (top 5 of 7290 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
224,207,858
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 224207858
chr1 20388862
chr2 17058093
chr3 14014369
chr4 10870655
chr5 11840109
chr6 12105316
chr7 11775528
chr8 9793476
chr9 9545825
chr10 10343243
chr11 12053640
chr12 10995688
chr13 5813612
chr14 7576954
chr15 6928442
chr16 8652655
chr17 10596480
chr18 4896649
chr19 10240270
chr20 6068067
chr21 2729695
chr22 4950057
chrX 4609370
chrY 306289
GL000009.2 1135
GL000194.1 6684
GL000195.1 10332
GL000205.2 13106
GL000213.1 16
GL000218.1 1827
GL000219.1 8193
KI270711.1 222
KI270713.1 8505
KI270721.1 282
KI270726.1 176
KI270727.1 567
KI270728.1 2596
KI270731.1 98
KI270734.1 775

Fragment lengths

fragments min max mean median
fragments 224207858 1 5041 150.9 138
global fragment-length histogram

Files

Filename Size md5
d7924909ac635d27a5aaf99c11ea0373b9c3bb07.gz 2.07 GB aa1d7b9c4498dae72e4a0a1906966797
d7924909ac635d27a5aaf99c11ea0373b9c3bb07.gz.tbi 1.06 MB 11b1ba52196d1fb0bb78716da23859d5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 392f4672eecf1f92e8491fa9c2c0f0db
statistics/