Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d796b86685dfc58f3d1e1826d00a6c211ddb25f9content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d796b86685dfc58f3d1e1826d00a6c211ddb25f9
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d796b86685dfc58f3d1e1826d00a6c211ddb25f9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 930_C05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACCGAAGCATTGTGGC-930_C05, GCATCCTTCCCTGTTA-930_C05, GTATTGCAGGTCAAAG-930_C05, ACCAGGGAGGTCCAAT-930_C05, GGCTGAGAGCACGATT-930_C05 (top 5 of 4648 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
211,073,373
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 211073373
chr1 18736945
chr2 16876170
chr3 13837362
chr4 10955438
chr5 11798862
chr6 11706047
chr7 11446322
chr8 9828610
chr9 8709429
chr10 9901126
chr11 11215462
chr12 10415001
chr13 5730570
chr14 7056332
chr15 6575348
chr16 7609544
chr17 8924299
chr18 4896301
chr19 7644426
chr20 5629373
chr21 2430493
chr22 4398302
chrX 4453904
chrY 250900
GL000009.2 481
GL000194.1 6492
GL000195.1 5305
GL000205.2 8297
GL000213.1 95
GL000218.1 2279
GL000219.1 15583
KI270711.1 408
KI270713.1 2716
KI270721.1 88
KI270726.1 300
KI270727.1 400
KI270728.1 3508
KI270731.1 322
KI270734.1 533

Fragment lengths

fragments min max mean median
fragments 211073373 1 5039 157.62 155
global fragment-length histogram

Files

Filename Size md5
d796b86685dfc58f3d1e1826d00a6c211ddb25f9.gz 2.01 GB 9ec02bebc236e73066672ac0bb77a973
d796b86685dfc58f3d1e1826d00a6c211ddb25f9.gz.tbi 1.03 MB e3c08b020ef3537659906104a68db3a4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB cfc7fdbd0d312d6b783bd0c6f8fb0d07
statistics/