Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d7e27e29f08b919b752974aa72fe48fd020938e3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d7e27e29f08b919b752974aa72fe48fd020938e3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d7e27e29f08b919b752974aa72fe48fd020938e3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 930_B05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCATTGTGTACCAGGT-930_B05, CCGGTTAAGTAGCGGG-930_B05, GACCTCAAGGTCAAAG-930_B05, CTTAAGGGTTGTTCAC-930_B05, GCTAGTGTCATCCTCA-930_B05 (top 5 of 1077 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
72,820,220
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 72820220
chr1 6478927
chr2 5783461
chr3 4835064
chr4 3781205
chr5 4066760
chr6 4055524
chr7 3904819
chr8 3356749
chr9 3005709
chr10 3409659
chr11 3864793
chr12 3620572
chr13 1976551
chr14 2438526
chr15 2248063
chr16 2627190
chr17 3108386
chr18 1693151
chr19 2576405
chr20 1950794
chr21 843092
chr22 1513727
chrX 1565230
chrY 104418
GL000009.2 216
GL000194.1 1359
GL000195.1 1474
GL000205.2 3157
GL000213.1 14
GL000218.1 914
GL000219.1 2579
KI270711.1 117
KI270713.1 569
KI270721.1 51
KI270726.1 8
KI270727.1 62
KI270728.1 631
KI270731.1 66
KI270734.1 228

Fragment lengths

fragments min max mean median
fragments 72820220 1 5036 171.99 163
global fragment-length histogram

Files

Filename Size md5
d7e27e29f08b919b752974aa72fe48fd020938e3.gz 667.22 MB a706be57f6aec79f1134f2c87fbf6757
d7e27e29f08b919b752974aa72fe48fd020938e3.gz.tbi 685.26 KB 017651f0d1e7dad75996c35b49cadae6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB d84962ab6130c6f1bdbf5a6a001cd42f
statistics/