Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d90171e6882759a4e1b77f9d9ab4216d67127c00content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d90171e6882759a4e1b77f9d9ab4216d67127c00
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d90171e6882759a4e1b77f9d9ab4216d67127c00
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 930_A05
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGTCCTGCAGGCGAGT-930_A05, GCATATATCCTCACAC-930_A05, AGTGCGGAGGAACGGT-930_A05, ACTAACTCAGGCGAGT-930_A05, ACCAAGTTCCGTAAAC-930_A05 (top 5 of 1637 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
128,632,222
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 128632222
chr1 11260294
chr2 10294529
chr3 8587440
chr4 6804823
chr5 7250384
chr6 7270142
chr7 6982066
chr8 6007763
chr9 5233775
chr10 6011183
chr11 6814567
chr12 6369225
chr13 3552188
chr14 4274317
chr15 3968072
chr16 4628417
chr17 5342566
chr18 3023799
chr19 4514407
chr20 3391958
chr21 1499140
chr22 2563013
chrX 2778252
chrY 187997
GL000009.2 423
GL000194.1 2766
GL000195.1 2373
GL000205.2 6219
GL000213.1 39
GL000218.1 1828
GL000219.1 5165
KI270711.1 218
KI270713.1 954
KI270721.1 70
KI270726.1 3
KI270727.1 83
KI270728.1 1194
KI270731.1 122
KI270734.1 448

Fragment lengths

fragments min max mean median
fragments 128632222 1 5038 170.27 162
global fragment-length histogram

Files

Filename Size md5
d90171e6882759a4e1b77f9d9ab4216d67127c00.gz 1.17 GB 5700973fcb36a4876e72258e80ef32c4
d90171e6882759a4e1b77f9d9ab4216d67127c00.gz.tbi 834.49 KB 596c19c1de6180876d95355d6ebf3670
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 846cdee53427951d431a1dc0800eaaec
statistics/