Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d928bc14055bf20a5f89801ee58a0ccdf210a045content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library d928bc14055bf20a5f89801ee58a0ccdf210a045
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d928bc14055bf20a5f89801ee58a0ccdf210a045
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1001_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CGGTTTGAGCTTTGTT-1001_B06, GCAAGTCGTGAGCACT-1001_B06, CAAATCATCGTTCACC-1001_B06, GTGTGTTAGTTTGCGG-1001_B06, ATGGCTAGTCAGTAAT-1001_B06 (top 5 of 3599 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
113,387,277
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 113387277
chr1 10820398
chr2 8365021
chr3 6895465
chr4 4810443
chr5 5667776
chr6 5998254
chr7 5577145
chr8 4677078
chr9 5120292
chr10 5525628
chr11 6430612
chr12 5342903
chr13 2645116
chr14 3782631
chr15 3746270
chr16 4464573
chr17 6229175
chr18 2276014
chr19 5398223
chr20 3223881
chr21 1283567
chr22 2814115
chrX 2157616
chrY 114940
GL000009.2 315
GL000194.1 1888
GL000195.1 3278
GL000205.2 5613
GL000213.1 24
GL000218.1 1355
GL000219.1 4303
KI270711.1 312
KI270713.1 1414
KI270721.1 79
KI270726.1 6
KI270727.1 100
KI270728.1 957
KI270731.1 92
KI270734.1 405

Fragment lengths

fragments min max mean median
fragments 113387277 1 5036 182.06 165
global fragment-length histogram

Files

Filename Size md5
d928bc14055bf20a5f89801ee58a0ccdf210a045.gz 1.05 GB 488710fa829f0afd4c6fb8808ad0727f
d928bc14055bf20a5f89801ee58a0ccdf210a045.gz.tbi 788.29 KB d4678b7dc3803ea51ed9675509662669
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 3c203c3d25b8f13a420a9c2351cd8989
statistics/