Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/df42bd3814e189cb1624b583d99d53e926f69b6bcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library df42bd3814e189cb1624b583d99d53e926f69b6b
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: df42bd3814e189cb1624b583d99d53e926f69b6b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 847_B04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGTCATAAGTGAGCGG-847_B04, GTGCTGATCGGGACCT-847_B04, ACGTCCTTCCCAGTAG-847_B04, AGGTACGCAATGCCTA-847_B04, GTGATCAGTTATCGAG-847_B04 (top 5 of 2191 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
188,141,162
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 188141162
chr1 16358213
chr2 14756189
chr3 12532418
chr4 10139063
chr5 10566620
chr6 10565507
chr7 10263667
chr8 8690418
chr9 7616266
chr10 8705472
chr11 9846437
chr12 9325467
chr13 5222153
chr14 6337037
chr15 5759176
chr16 6706435
chr17 7690993
chr18 4422980
chr19 6799705
chr20 4806977
chr21 2235756
chr22 3700028
chrX 5027387
chrY 12766
GL000009.2 1152
GL000194.1 4711
GL000195.1 5224
GL000205.2 12910
GL000213.1 91
GL000218.1 3489
GL000219.1 18853
KI270711.1 383
KI270713.1 3032
KI270721.1 100
KI270726.1 121
KI270727.1 276
KI270728.1 3150
KI270731.1 238
KI270734.1 302

Fragment lengths

fragments min max mean median
fragments 188141162 1 5039 191 167
global fragment-length histogram

Files

Filename Size md5
df42bd3814e189cb1624b583d99d53e926f69b6b.gz 1.7 GB c80a008185dc1965e1232ed522c8425c
df42bd3814e189cb1624b583d99d53e926f69b6b.gz.tbi 985.38 KB d6546c4595bb360c5c55bbb776f6125e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2fbbe51da89778951cbf19a48174125c
statistics/