Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e081c2f03d42db88218ae7abf1d52c37ee6da3e3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e081c2f03d42db88218ae7abf1d52c37ee6da3e3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e081c2f03d42db88218ae7abf1d52c37ee6da3e3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2355_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAGGTGCGTGGACCTG-2355_C02, CTATTCAGTCCTTAGT-2355_C02, AAATCCGGTGCGCGTA-2355_C02, TGCTTCATCATCACTT-2355_C02, CTCCCTGAGGCGCTAC-2355_C02 (top 5 of 4011 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
224,803,094
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 224803094
chr1 20313814
chr2 17463251
chr3 14499447
chr4 11345874
chr5 12351057
chr6 12491815
chr7 11897417
chr8 10099294
chr9 9376104
chr10 10561123
chr11 12080138
chr12 11023275
chr13 6073593
chr14 7557534
chr15 7001048
chr16 8285819
chr17 10046299
chr18 5040988
chr19 8967845
chr20 6005651
chr21 2608416
chr22 4618952
chrX 4760889
chrY 294220
GL000009.2 588
GL000194.1 3469
GL000195.1 6810
GL000205.2 11611
GL000213.1 64
GL000218.1 1376
GL000219.1 8399
KI270711.1 522
KI270713.1 4987
KI270721.1 191
KI270726.1 25
KI270727.1 147
KI270728.1 448
KI270731.1 126
KI270734.1 468

Fragment lengths

fragments min max mean median
fragments 224803094 1 5039 208.78 170
global fragment-length histogram

Files

Filename Size md5
e081c2f03d42db88218ae7abf1d52c37ee6da3e3.gz 2.07 GB 7a83ac624b0b47f068a6b47ab7a0aa05
e081c2f03d42db88218ae7abf1d52c37ee6da3e3.gz.tbi 1.07 MB e309dc95fee38db6a3775de24e8e58c5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 9628c4ddf991e575d2ab0f38aa535b59
statistics/