Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e269dba623481bb6f19c2a4df5b523bd69a5ba4dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e269dba623481bb6f19c2a4df5b523bd69a5ba4d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e269dba623481bb6f19c2a4df5b523bd69a5ba4d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2468_E02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGATCAGGTTAGCGTA-2468_E02, ACCGCAATCGCTATAA-2468_E02, TAGAGCCGTTTGGTTC-2468_E02, CAACCCTTCGCAGGCT-2468_E02, CCAATATCATTGCGGT-2468_E02 (top 5 of 4300 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
270,820,721
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 270820721
chr1 24450446
chr2 21171973
chr3 17541037
chr4 13795863
chr5 14767222
chr6 15013934
chr7 14410220
chr8 12381858
chr9 11302530
chr10 12809811
chr11 14393264
chr12 13249137
chr13 7469547
chr14 9121563
chr15 8516331
chr16 9873846
chr17 11877472
chr18 6132355
chr19 10219168
chr20 7316474
chr21 3180497
chr22 5557898
chrX 5814599
chrY 396527
GL000009.2 1625
GL000194.1 4245
GL000195.1 6334
GL000205.2 14531
GL000213.1 13
GL000218.1 4931
GL000219.1 17239
KI270711.1 827
KI270713.1 4946
KI270721.1 199
KI270726.1 28
KI270727.1 328
KI270728.1 643
KI270731.1 134
KI270734.1 1126

Fragment lengths

fragments min max mean median
fragments 270820721 1 5034 186.59 161
global fragment-length histogram

Files

Filename Size md5
e269dba623481bb6f19c2a4df5b523bd69a5ba4d.gz 2.52 GB d1290ca75a0aab31ad015ec8d0546329
e269dba623481bb6f19c2a4df5b523bd69a5ba4d.gz.tbi 1.19 MB 1b58df27271423404083fd35b67fbd26
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 824b235d8c69cbc0b36453e6b54132ef
statistics/