Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e36477f7fbb1273c15d069c113a228b085330e0dcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e36477f7fbb1273c15d069c113a228b085330e0d
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e36477f7fbb1273c15d069c113a228b085330e0d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2306_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CAATCTAAGCGTGCGT-2306_B02, AGTCAAGAGAGGAGGA-2306_B02, AGTGCACGTTTACCGT-2306_B02, ATAGATGCATCCAGGT-2306_B02, GAGGTGAGTTCAAGCA-2306_B02 (top 5 of 3647 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
211,708,701
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 211708701
chr1 18521540
chr2 16695769
chr3 13786315
chr4 11254069
chr5 11910681
chr6 11843434
chr7 11445158
chr8 9611098
chr9 8636977
chr10 9847113
chr11 11093560
chr12 10429615
chr13 5782468
chr14 7116603
chr15 6496800
chr16 7699698
chr17 8792869
chr18 4956846
chr19 7634226
chr20 5508375
chr21 2467175
chr22 4254672
chrX 5847392
chrY 15190
GL000009.2 612
GL000194.1 5411
GL000195.1 5240
GL000205.2 16637
GL000213.1 54
GL000218.1 4003
GL000219.1 20027
KI270711.1 414
KI270713.1 1768
KI270721.1 96
KI270726.1 7
KI270727.1 330
KI270728.1 5900
KI270731.1 191
KI270734.1 368

Fragment lengths

fragments min max mean median
fragments 211708701 1 5031 184.21 160
global fragment-length histogram

Files

Filename Size md5
e36477f7fbb1273c15d069c113a228b085330e0d.gz 2.01 GB 99318513e2762750b3529b30923fd5cd
e36477f7fbb1273c15d069c113a228b085330e0d.gz.tbi 1.06 MB 456f9031f16b16fbcff29d49a0276f28
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB ace2b278a51e305e5b0069c5647a3453
statistics/