Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e40c7d288236f8ef3e38aa396c1aaefa83312fb8content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e40c7d288236f8ef3e38aa396c1aaefa83312fb8
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e40c7d288236f8ef3e38aa396c1aaefa83312fb8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2018_A01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TAGTAGGAGCACAGGG-2018_A01, AGTAACGAGGTCCAAT-2018_A01, TGAACAACACGAATTT-2018_A01, TGTGATCAGCTGTCAG-2018_A01, ATTACGTCATTGTCCT-2018_A01 (top 5 of 6792 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
314,081,492
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 314081492
chr1 28136480
chr2 24097439
chr3 19915569
chr4 15597390
chr5 16907330
chr6 17136637
chr7 16822359
chr8 13855113
chr9 12907569
chr10 14423168
chr11 16779174
chr12 15646958
chr13 8267643
chr14 10744551
chr15 9851390
chr16 12216986
chr17 14286106
chr18 6981086
chr19 13407779
chr20 8501364
chr21 3740692
chr22 6909488
chrX 6429055
chrY 449073
GL000009.2 1540
GL000194.1 9286
GL000195.1 11281
GL000205.2 20177
GL000213.1 20
GL000218.1 2657
GL000219.1 10146
KI270711.1 292
KI270713.1 9783
KI270721.1 356
KI270726.1 298
KI270727.1 679
KI270728.1 3507
KI270731.1 154
KI270734.1 917

Fragment lengths

fragments min max mean median
fragments 314081492 1 5039 164.56 150
global fragment-length histogram

Files

Filename Size md5
e40c7d288236f8ef3e38aa396c1aaefa83312fb8.gz 2.92 GB 95cb44e89483cd2e0ef0c87f6fc6d72f
e40c7d288236f8ef3e38aa396c1aaefa83312fb8.gz.tbi 1.28 MB 6706942f0b900c2c9ef05aece5e75a08
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 7b282d22ed63eeae0bb14dd2cd8ad7bc
statistics/