Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e456fb21c07a1c8214dba147a7457ebb5965deeccontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e456fb21c07a1c8214dba147a7457ebb5965deec
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e456fb21c07a1c8214dba147a7457ebb5965deec
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2370_B03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCAATCGCATGAATAG-2370_B03, CGAAGTAAGTTTGCGG-2370_B03, AGGATGCAGTATCGCG-2370_B03, ACATCATCATGGCCCA-2370_B03, GAAACTGAGAAGGTGC-2370_B03 (top 5 of 5607 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
316,557,315
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 316557315
chr1 28110902
chr2 24643174
chr3 20677987
chr4 16418761
chr5 17530864
chr6 17715619
chr7 16953331
chr8 14240360
chr9 13000319
chr10 14678207
chr11 16806979
chr12 15751481
chr13 8507519
chr14 10817698
chr15 9803772
chr16 11813636
chr17 13792990
chr18 7260437
chr19 12440699
chr20 8356250
chr21 3686936
chr22 6552524
chrX 6515803
chrY 418969
GL000009.2 921
GL000194.1 6277
GL000195.1 9641
GL000205.2 19595
GL000213.1 94
GL000218.1 2412
GL000219.1 13725
KI270711.1 593
KI270713.1 6633
KI270721.1 260
KI270726.1 38
KI270727.1 165
KI270728.1 867
KI270731.1 230
KI270734.1 647

Fragment lengths

fragments min max mean median
fragments 316557315 1 5039 211.88 171
global fragment-length histogram

Files

Filename Size md5
e456fb21c07a1c8214dba147a7457ebb5965deec.gz 2.9 GB 9fa28278e73e203c44f47e99368640d5
e456fb21c07a1c8214dba147a7457ebb5965deec.gz.tbi 1.3 MB 2c4ca0befffe1cc391ca10b5566b29f0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 6a56755f640fe64be27bac42fc73529b
statistics/