Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e4bd2469ac71702c53edb3d4156bccd405a4aea4content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e4bd2469ac71702c53edb3d4156bccd405a4aea4
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e4bd2469ac71702c53edb3d4156bccd405a4aea4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2368_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCATAAGGTTACCGGG-2368_C02, CTCGTTATCCACCCTG-2368_C02, ACCTTCATCCGGAACC-2368_C02, ATTACGTCATGAATAG-2368_C02, CTACCTCAGGTCGAGG-2368_C02 (top 5 of 3007 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
128,126,381
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 128126381
chr1 11605110
chr2 9866339
chr3 8218237
chr4 6455688
chr5 6938441
chr6 7120711
chr7 6738922
chr8 5680749
chr9 5527696
chr10 6020352
chr11 6770400
chr12 6253305
chr13 3508247
chr14 4296355
chr15 3893227
chr16 4683088
chr17 5810515
chr18 2988231
chr19 5263297
chr20 3399575
chr21 1564589
chr22 2590717
chrX 2712613
chrY 195287
GL000009.2 593
GL000194.1 2257
GL000195.1 3549
GL000205.2 7465
GL000213.1 53
GL000218.1 1041
GL000219.1 5213
KI270711.1 451
KI270713.1 3046
KI270721.1 134
KI270726.1 20
KI270727.1 109
KI270728.1 426
KI270731.1 81
KI270734.1 252

Fragment lengths

fragments min max mean median
fragments 128126381 1 5026 177.77 152
global fragment-length histogram

Files

Filename Size md5
e4bd2469ac71702c53edb3d4156bccd405a4aea4.gz 1.19 GB 1047182491fd0e4ff41ea28cf7e5e07c
e4bd2469ac71702c53edb3d4156bccd405a4aea4.gz.tbi 839.87 KB 89147a021b74a887ef57b5b00f740c46
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 0adeba04db894faad6ff5ae23d78f55e
statistics/