Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e4edd9614b130153b0c227ac29f33463bc482ea3content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e4edd9614b130153b0c227ac29f33463bc482ea3
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e4edd9614b130153b0c227ac29f33463bc482ea3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2513_B04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGATTAAGCGCAATT-2513_B04, GAGTGATCAGACAAAC-2513_B04, GTTAGACTCATTAGTG-2513_B04, GGATGAATCGCTAAGT-2513_B04, AAGGATCCATGTTTGG-2513_B04 (top 5 of 4237 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
215,390,709
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 215390709
chr1 19156263
chr2 16987625
chr3 14286481
chr4 11246955
chr5 11998595
chr6 11952211
chr7 11522961
chr8 9890046
chr9 8961592
chr10 10019558
chr11 11302997
chr12 10514971
chr13 6035942
chr14 7177355
chr15 6630963
chr16 7647531
chr17 9061914
chr18 5023395
chr19 7747524
chr20 5650619
chr21 2555330
chr22 4298850
chrX 5663790
chrY 14406
GL000009.2 1480
GL000194.1 3857
GL000195.1 4589
GL000205.2 10748
GL000213.1 146
GL000218.1 2561
GL000219.1 11939
KI270711.1 462
KI270713.1 3373
KI270721.1 209
KI270726.1 16
KI270727.1 849
KI270728.1 1843
KI270731.1 175
KI270734.1 588

Fragment lengths

fragments min max mean median
fragments 215390709 1 5041 197.92 165
global fragment-length histogram

Files

Filename Size md5
e4edd9614b130153b0c227ac29f33463bc482ea3.gz 2.03 GB 576dfac7664409d46afff6d4e7f84be7
e4edd9614b130153b0c227ac29f33463bc482ea3.gz.tbi 1.07 MB 4085846aa661d967a3c71317fbd17ea9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2be7018ce96a82ccadcf4859573b1961
statistics/