Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e65d1857d53322a304818435ffb9a2354fbf514fcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e65d1857d53322a304818435ffb9a2354fbf514f
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e65d1857d53322a304818435ffb9a2354fbf514f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2357_F03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ATTGAAGCAGGCGAGT-2357_F03, TAGTACGGTCCTAACT-2357_F03, AGTAGGATCATTAGTG-2357_F03, GTTGGAGCAAATGCCC-2357_F03, GGCGGTAAGTTTCCGC-2357_F03 (top 5 of 4727 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
180,078,077
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 180078077
chr1 16257206
chr2 13907801
chr3 11638295
chr4 9188212
chr5 9891094
chr6 9887940
chr7 9573798
chr8 8107816
chr9 7620023
chr10 8425703
chr11 9570070
chr12 8776303
chr13 4857699
chr14 6034127
chr15 5625562
chr16 6714610
chr17 7993664
chr18 4170626
chr19 7071957
chr20 4814451
chr21 2141206
chr22 3769543
chrX 3748334
chrY 257702
GL000009.2 597
GL000194.1 3450
GL000195.1 5309
GL000205.2 10619
GL000213.1 66
GL000218.1 1409
GL000219.1 7454
KI270711.1 502
KI270713.1 3470
KI270721.1 163
KI270726.1 20
KI270727.1 135
KI270728.1 585
KI270731.1 153
KI270734.1 403

Fragment lengths

fragments min max mean median
fragments 180078077 1 5039 190.98 160
global fragment-length histogram

Files

Filename Size md5
e65d1857d53322a304818435ffb9a2354fbf514f.gz 1.71 GB e05d64ab1ade5b7bf44476c451a30b47
e65d1857d53322a304818435ffb9a2354fbf514f.gz.tbi 995.79 KB 7b1a40203c61acda4afd47390fc7b1bb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 8594dec74a3cfb89004cd7b3db67bc54
statistics/