Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e67331484419894e2ba3738741d020acdcf4f89econtent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library e67331484419894e2ba3738741d020acdcf4f89e
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e67331484419894e2ba3738741d020acdcf4f89e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2531_A03
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCGCATTGTCCCGGAA-2531_A03, TACCTTTAGCGGATAA-2531_A03, CCAAGGCTCATTTGTC-2531_A03, GATTGCGTCTGGTCCT-2531_A03, GATCACTAGCTATATG-2531_A03 (top 5 of 2901 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
159,780,158
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 159780158
chr1 14112163
chr2 12603977
chr3 10574884
chr4 8429751
chr5 8831997
chr6 8768207
chr7 8639798
chr8 7316643
chr9 6622528
chr10 7493324
chr11 8396248
chr12 7791873
chr13 4391723
chr14 5303520
chr15 4948464
chr16 5812142
chr17 6700185
chr18 3697824
chr19 5669604
chr20 4162287
chr21 1873868
chr22 3278423
chrX 4315039
chrY 11572
GL000009.2 1185
GL000194.1 3144
GL000195.1 3128
GL000205.2 9542
GL000213.1 124
GL000218.1 2233
GL000219.1 9021
KI270711.1 403
KI270713.1 2134
KI270721.1 177
KI270726.1 14
KI270727.1 509
KI270728.1 1973
KI270731.1 135
KI270734.1 392

Fragment lengths

fragments min max mean median
fragments 159780158 1 5028 175.92 158
global fragment-length histogram

Files

Filename Size md5
e67331484419894e2ba3738741d020acdcf4f89e.gz 1.53 GB b7ce61f951dc299f31a779f27c514bf6
e67331484419894e2ba3738741d020acdcf4f89e.gz.tbi 948.06 KB 99376c3e57548434d0a18ce4092141ff
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 018f3d5dda11157e4063d04313b84b27
statistics/